Constants and Markers¶

Constants and markers used on COMORBUSS are stored in the file comorbuss/settings.py.

`ACT_FREE` ¶

Marker for free particle

`ACT_ISOL` ¶

Marker for particles in isolation

`ACT_QRNT` ¶

Marker for quarantined particles

`ACT_TRNP` ¶

Marker for particles in transit

`ACT_VISIT` ¶

Marker for particle visiting

`ACT_WORK` ¶

Marker for particle working

`ACT_deceased` ¶

Marker for deceased particles

`AGE_DEF` ¶

List of strings with the definition of all age groups.

`ALL_AGES` ¶

List with the id of all age groups.

`COLORS` ¶

Colors for ploting graphs (available colors: blue, orange, green, red, purple, brown, pink, gray, yellow, teal)

`COLORS_DEEP` ¶

Colors for ploting graphs, less bright variant (available colors: blue, orange, green, red, purple, brown, pink, gray, yellow, teal)

`COLORS_MAP_STRS` ¶

Colormaps for plotting several seeds

`COLORS_STATES` ¶

Colors to be used in states plots

`COLORS_STATES_DEEP` ¶

Colors to be used in states plots, less bright variant

`COLORS_SYMPT` ¶

Colors to be used in symptoms plots.

`COLORS_SYMPT_DEEP` ¶

Colors to be used in symptoms plots, less bright variant

`DATA_DIREC` ¶

Path to configurations directory

`DEMO_DATA_FILE` ¶

Path to brazilian demographics data file

`DIAG_NO` ¶

Marker for particles negatively diagnosed

`DIAG_NYET` ¶

Marker for particles not yet diagnosed

`DIAG_YES` ¶

Marker for particles positively diagnosed

`LCKD_PRGSS_FINISH` ¶

Marker to indicate to stop a lockdown

`LCKD_PRGSS_OFF` ¶

Marker to indicate a not in lockdown

`LCKD_PRGSS_ON` ¶

Marker to indicate a in lockdown

`LCKD_PRGSS_START` ¶

Marker to indicate to start a lockdown

`MSG_ERROR` ¶

Marker for messages of Error

`MSG_EVENT` ¶

Marker for messages of Events

`MSG_PRGS` ¶

Marker for messages of Progress

`MSG_RSLT` ¶

Marker for messages of Results

`MSG_TEXTS` ¶

Dictionary to translate messages makers to string.

`MSG_WRNG` ¶

Marker for messages of Warning

`NET_AIRBORNE` ¶

Marker for a net in which the infection spreads through airborne aerosol particles, which come from infectious particles.

`NET_DEFAULT` ¶

Marker for a default net used in a service. This net is currently the barabasi_albert_graph from the Newtworkx package

`NET_HOSPITALS` ¶

Marker for a net used in hospitals. Currently the default net

`NET_ISOLATE` ¶

Marker for a net that isolate all particles

`NET_MARKETS` ¶

Marker for a net used in markets. This net models the contacts by a mean number of contacts between persons in the market, in addition to a percentage of the workers in markets being cashiers. Visitors to markets mandatorily get in contact with one of the cashiers

`NET_RESTAURANTS_1` ¶

Marker for a net used in restaurants. This net is modelled by the percentage of workers that are waiters, and the mean number of contacts between workers. Workers get in contact between themselves, clients get in contact with other clients in the same table, and one of them gets in contact with one waiter.

`NET_RESTAURANTS_2` ¶

Marker for a net used in restaurants. This net is modelled by the percentage of workers that are waiters, the mean number of contacts between workers, and the average number of persons per table. Workers get in contact between themselves, clients get in contact with other clients in the same table, and every client gets in contact with the waiter of that table.

`NET_SCHOOLS` ¶

Marker for a net used in schools. This net model takes into accounts break period, mean number of contacts in breaks, number of classrooms in a break, and mean number of students in a classroom. During breaks, students may get in contact with everyone else in the same break, and during classrooms, students can only get in contact with the neighbors in their position in a 2d grid.

`NET_STREET_MARKETS` ¶

Marker for a net used in street markets. This net is very similar to that used in markets, with the exception that all workers are cashiers, and that visitors may get in contact with more than one cashier.

`NO_INFEC` ¶

Marker not infected

`OUT_DIR` ¶

Path to the default output dirtectory

`PLC_CEMT` ¶

Marker for placement for deceased particles

`PLC_ENV` ¶

Marker for placement at environment

`PLC_HOME` ¶

Marker for placement at home

`PLC_TRSP` ¶

Marker for placement in transport

`QRNT_FREE` ¶

Marker for not in quarantine

`SERVICE_CLOSE_DAYS_FILE` ¶

Path to service close days data file

`STATE_D` ¶

Marker for deceased state

`STATE_E` ¶

Marker for exposed state (incubation)

`STATE_I` ¶

Marker for infectious state

`STATE_R` ¶

Marker for recovered state

`STATE_S` ¶

Marker for susceptible state

`SYMPT_NO` ¶

Marker for asymptomatic

`SYMPT_NYET` ¶

Marker for not yet symptomatic

`SYMPT_SEVERE` ¶

Marker for severe symptomatic

`SYMPT_YES` ¶

Marker for symptomatic

`WAIFW` ¶

Matrix that depicts who acquired infection from whom, for a general disease. See Table 2 in https://doi.org/10.1016/j.socnet.2007.04.005

`inf` ¶

$\infty$ from numpi.inf

`ninf` ¶

$-\infty$ from numpi.ninf

`pi` ¶

$\pi$ from numpi.pi

Constants and Markers¶

ACT_FREE ¶

ACT_ISOL ¶

ACT_QRNT ¶

ACT_TRNP ¶

ACT_VISIT ¶

ACT_WORK ¶

ACT_deceased ¶

AGE_DEF ¶

ALL_AGES ¶

COLORS ¶

COLORS_DEEP ¶

COLORS_MAP_STRS ¶

COLORS_STATES ¶

COLORS_STATES_DEEP ¶

COLORS_SYMPT ¶

COLORS_SYMPT_DEEP ¶

DATA_DIREC ¶

DEMO_DATA_FILE ¶

DIAG_NO ¶

DIAG_NYET ¶

DIAG_YES ¶

LCKD_PRGSS_FINISH ¶

LCKD_PRGSS_OFF ¶

LCKD_PRGSS_ON ¶

LCKD_PRGSS_START ¶

MSG_ERROR ¶

MSG_EVENT ¶

MSG_PRGS ¶

MSG_RSLT ¶

MSG_TEXTS ¶

MSG_WRNG ¶

NET_AIRBORNE ¶

NET_DEFAULT ¶

NET_HOSPITALS ¶

NET_ISOLATE ¶

NET_MARKETS ¶

NET_RESTAURANTS_1 ¶

NET_RESTAURANTS_2 ¶

NET_SCHOOLS ¶

NET_STREET_MARKETS ¶

NO_INFEC ¶

OUT_DIR ¶

PLC_CEMT ¶

PLC_ENV ¶

PLC_HOME ¶

PLC_TRSP ¶

QRNT_FREE ¶

SERVICE_CLOSE_DAYS_FILE ¶

STATE_D ¶

STATE_E ¶

STATE_I ¶

STATE_R ¶

STATE_S ¶

SYMPT_NO ¶

SYMPT_NYET ¶

SYMPT_SEVERE ¶

SYMPT_YES ¶

WAIFW ¶

inf ¶

ninf ¶

pi ¶